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1

Optimized Data Fusion for Kernel k-Means Clustering

Shi Yu, Tranchevent, L.-C., Xinhai Liu, Glanzel, W., Suykens, J.A.K., De Moor, B., Moreau, Y.

Journal:

IEEE Transactions on Pattern Analysis and Machine Intelligence

Year:

2012

Language:

english

File:

PDF, 1.22 MB

english, 2012

2

Kernel-based data fusion for gene prioritization

De Bie, T., Tranchevent, L.-C., van Oeffelen, L. M. M., Moreau, Y.

Journal:

Year:

2007

Language:

english

File:

PDF, 176 KB

english, 2007

3

An unbiased evaluation of gene prioritization tools

Bornigen, D., Tranchevent, L.-C., Bonachela-Capdevila, F., Devriendt, K., De Moor, B., De Causmaecker, P., Moreau, Y.

Journal:

Year:

2012

Language:

english

File:

PDF, 299 KB

english, 2012

4

eXtasy: variant prioritization by genomic data fusion

Sifrim, Alejandro, Popovic, Dusan, Tranchevent, Leon-Charles, Ardeshirdavani, Amin, Sakai, Ryo, Konings, Peter, Vermeesch, Joris R, Aerts, Jan, De Moor, Bart, Moreau, Yves

Journal:

Year:

2013

Language:

english

File:

PDF, 303 KB

english, 2013

5

BMPR1A is a candidate gene for congenital heart defects associated with the recurrent 10q22q23 deletion syndrome

Jeroen Breckpot, Léon-Charles Tranchevent, Bernard Thienpont, Marijke Bauters, Els Troost, Marc Gewillig, Joris R. Vermeesch, Yves Moreau, Koenraad Devriendt, Hilde Van Esch

Journal:

European Journal of Medical Genetics

Year:

2012

Language:

english

File:

PDF, 306 KB

english, 2012

6

A deep neural network approach to predicting clinical outcomes of neuroblastoma patients

Tranchevent, Léon-Charles, Azuaje, Francisco, Rajapakse, Jagath C.

Journal:

BMC Medical Genomics

Year:

2019

Language:

english

File:

PDF, 1.20 MB

english, 2019

7

Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease

Alejandro Sifrim, Jeroen KJ Van Houdt, Leon-Charles Tranchevent…

Journal:

Genome Medicine

Year:

2012

Language:

english

File:

PDF, 366 KB

english, 2012

8

A deep neural network approach to predicting clinical outcomes of neuroblastoma patients

Tranchevent, Léon-Charles, Azuaje, Francisco, Rajapakse, Jagath C.

Journal:

BMC Medical Genomics

Year:

2019

File:

PDF, 1.20 MB

2019

9

L2-norm multiple kernel learning and its application to biomedical data fusion

Shi Yu, Tillmann Falck, Anneleen Daemen, Leon-Charles Tranchevent, Johan AK Suykens, Bart De Moor, Yves Moreau

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.02 MB

english, 2010

10

Congenital heart defects in a novel recurrent 22q11.2 deletion harboring the genes CRKL and MAPK1

Jeroen Breckpot, Bernard Thienpont, Marijke Bauters, Leon-Charles Tranchevent, Marc Gewillig, Karel Allegaert, Joris R. Vermeesch, Yves Moreau, Prof. Koenraad Devriendt

Journal:

American Journal of Medical Genetics Part A

Year:

2012

Language:

english

File:

PDF, 246 KB

english, 2012

11

Predicting clinical outcome of neuroblastoma patients using an integrative network-based approach

Tranchevent, Léon-Charles, Nazarov, Petr V., Kaoma, Tony, Schmartz, Georges P., Muller, Arnaud, Kim, Sang-Yoon, Rajapakse, Jagath C., Azuaje, Francisco

Journal:

Year:

2018

Language:

english

File:

PDF, 1.04 MB

english, 2018

12

Comparison of vocabularies, representations and ranking algorithms for gene prioritization by text mining

Yu, S., Van Vooren, S., Tranchevent, L.-C., De Moor, B., Moreau, Y.

Journal:

Year:

2008

Language:

english

File:

PDF, 271 KB

english, 2008

13

Challenges of Interpreting Copy Number Variation in Syndromic and Non-Syndromic Congenital Heart Defects

Breckpot, J., Thienpont, B., Arens, Y., Tranchevent, L.C., Vermeesch, J.R., Moreau, Y., Gewillig, M., Devriendt, K.

Journal:

Cytogenetic and Genome Research

Year:

2011

Language:

english

File:

PDF, 326 KB

english, 2011

14

[IEEE 2012 IEEE 12th International Conference on Bioinformatics & Bioengineering (BIBE) - Larnaca, Cyprus (2012.11.11-2012.11.13)] 2012 IEEE 12th International Conference on Bioinformatics & Bioengineering (BIBE) - Visualizing high dimensional datasets using parallel coordinates: Application to gene prioritization

Boogaerts, Thomas, Tranchevent, Leon-Charles, Pavlopoulos, Georgios A., Aerts, Jan, Vandewalle, Joos

Year:

2012

Language:

english

File:

PDF, 1.11 MB

english, 2012

15

Detection of novel 3' untranslated region extensions with 3' expression microarrays

Lieven Thorrez, Leon-Charles Tranchevent, Hui Ju Chang, Yves Moreau, Frans Schuit

Journal:

Year:

2010

Language:

english

File:

PDF, 2.99 MB

english, 2010

16

A bioinformatics e-dating story: computational prediction and prioritization of receptor-ligand pairs

Ernesto Iacucci, Léon-Charles Tranchevent, Dusan Popovic…

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 65 KB

english, 2012

17

Computational tools for prioritizing candidate genes: boosting disease gene discovery

Moreau, Yves, Tranchevent, Léon-Charles

Journal:

Nature Reviews Genetics

Year:

2012

Language:

english

File:

PDF, 1.60 MB

english, 2012

18

Endothelial, epithelial, and fibroblast cells exhibit specific splicing programs independently of their tissue of origin

Mallinjoud, P., Villemin, J.-P., Mortada, H., Polay Espinoza, M., Desmet, F.-O., Samaan, S., Chautard, E., Tranchevent, L.-C., Auboeuf, D.

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 1.24 MB

english, 2014

19

[Studies in Computational Intelligence] Kernel-based Data Fusion for Machine Learning Volume 345 || Weighted Multiple Kernel Canonical Correlation

Yu, Shi, Tranchevent, Léon-Charles, De Moor, Bart, Moreau, Yves

Year:

2011

Language:

english

File:

PDF, 453 KB

english, 2011

20

Integrating Computational Biology and Forward Genetics in Drosophila

Aerts, Stein, Vilain, Sven, Hu, Shu, Tranchevent, Leon-Charles, Barriot, Roland, Yan, Jiekun, Moreau, Yves, Hassan, Bassem A., Quan, Xiao-Jiang, Kim, Stuart K.

Journal:

Year:

2009

Language:

english

File:

PDF, 668 KB

english, 2009

21

Physical-Chemistry-Based Analysis of Affymetrix Microarray Data

Heim, T., Tranchevent, L.-C., Carlon, E., Barkema, G. T.

Journal:

Journal of Physical Chemistry B

Year:

2006

Language:

english

File:

PDF, 796 KB

english, 2006

22

The Ddx5 and Ddx17 RNA helicases are cornerstones in the complex regulatory array of steroid hormone-signaling pathways

Samaan, S., Tranchevent, L.-C., Dardenne, E., Polay Espinoza, M., Zonta, E., Germann, S., Gratadou, L., Dutertre, M., Auboeuf, D.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 1.50 MB

english, 2014

23

Haploinsufficiency of TAB2 Causes Congenital Heart Defects in Humans

Bernard Thienpont, Litu Zhang, Alex V. Postma, Jeroen Breckpot, Léon-Charles Tranchevent, Peter Van Loo, Kjeld Møllgård, Niels Tommerup, Iben Bache, Zeynep Tümer, Klaartje van Engelen, Björn Menten, G

Journal:

The American Journal of Human Genetics

Year:

2010

Language:

english

File:

PDF, 986 KB

english, 2010

24

Optimized data fusion for K-means Laplacian clustering

Yu, S., Liu, X., Tranchevent, L.-C., Glanzel, W., Suykens, J. A. K., De Moor, B., Moreau, Y.

Journal:

Year:

2011

Language:

english

File:

PDF, 244 KB

english, 2011

25

[Studies in Computational Intelligence] Kernel-based Data Fusion for Machine Learning Volume 345 ||

Yu, Shi, Tranchevent, Léon-Charles, De Moor, Bart, Moreau, Yves

Year:

2011

Language:

english

File:

PDF, 3.95 MB

english, 2011

26

Large-scale benchmark of Endeavour using MetaCore maps

Schuierer, S., Tranchevent, L.-C., Dengler, U., Moreau, Y.

Journal:

Year:

2010

Language:

english

File:

PDF, 141 KB

english, 2010

27

Beegle: from literature mining to disease-gene discovery

ElShal, Sarah, Tranchevent, Léon-Charles, Sifrim, Alejandro, Ardeshirdavani, Amin, Davis, Jesse, Moreau, Yves

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 1.61 MB

english, 2015

28

Candidate gene prioritization with Endeavour

Tranchevent, Léon-Charles, Ardeshirdavani, Amin, ElShal, Sarah, Alcaide, Daniel, Aerts, Jan, Auboeuf, Didier, Moreau, Yves

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 643 KB

english, 2016

29

Gene prioritization through genomic data fusion

Aerts, Stein, Lambrechts, Diether, Maity, Sunit, Van Loo, Peter, Coessens, Bert, De Smet, Frederik, Tranchevent, Leon-Charles, De Moor, Bart, Marynen, Peter, Hassan, Bassem

Journal:

Nature Biotechnology

Year:

2006

Language:

english

File:

PDF, 469 KB

english, 2006

30

ENDEAVOUR update: a web resource for gene prioritization in multiple species

Tranchevent, L.-C., Barriot, R., Yu, S., Van Vooren, S., Van Loo, P., Coessens, B., De Moor, B., Aerts, S., Moreau, Y.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 2.24 MB

english, 2008

31

[Studies in Computational Intelligence] Kernel-based Data Fusion for Machine Learning Volume 345 || L n -norm Multiple Kernel Learning and Least Squares Support Vector Machines

Yu, Shi, Tranchevent, Léon-Charles, De Moor, Bart, Moreau, Yves

Year:

2011

Language:

english

File:

PDF, 730 KB

english, 2011

32

La place de la tâche orientée motorisée dans la rééducation de la marche chez l’hémiplégique

Guillaume Tisne, Fabien Font, Vincent Theillet, Richard Tranchevent, Mathieu Veber

Journal:

Kinésithérapie, la Revue

Year:

2012

Language:

french

File:

PDF, 595 KB

french, 2012

33

ReLiance: a machine learning and literature-based prioritization of receptor--ligand pairings

Iacucci, E., Tranchevent, L.-C., Popovic, D., Pavlopoulos, G. A., De Moor, B., Schneider, R., Moreau, Y.

Journal:

Year:

2012

Language:

english

File:

PDF, 511 KB

english, 2012

34

Identification of protein features encoded by alternative exons using Exon Ontology

Tranchevent, Léon-Charles, Aubé, Fabien, Dulaurier, Louis, Benoit-Pilven, Clara, Rey, Amandine, Poret, Arnaud, Chautard, Emilie, Mortada, Hussein, Desmet, François-Olivier, Chakrama, Fatima Zahra, Mor

Journal:

Genome Research

Year:

2017

Language:

english

File:

PDF, 1.31 MB

english, 2017

35

Gene prioritization and clustering by multi-view text mining

Shi Yu, Leon-Charles Tranchevent, Bart De Moor, Yves Moreau

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.61 MB

english, 2010

36

Erratum: Gene prioritization through genomic data fusion

Aerts, Stein, Lambrechts, Diether, Maity, Sunit, Van Loo, Peter, Coessens, Bert, De Smet, Frederik, Tranchevent, Leon-Charles, De Moor, Bart, Marynen, Peter, Hassan, Bassem

Journal:

Nature Biotechnology

Year:

2006

Language:

english

File:

PDF, 52 KB

english, 2006

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